BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027F08LP1|AL428762
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig461 715 0.0
3x_Contig377 633 0.0
3x_Contig1807 228 1e-59
>3x_Contig461
Length = 1467
Score = 715 bits (360), Expect = 0.0
Identities = 361/362 (99%)
Strand = Plus / Plus
Query: 527 tttttcattgtatccaaataattggaaagtcgaaccatctggtgaattgacgccaatgat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tttttcattgtatccaaataattggaaagtcgaaccatctggtgaattgacgccaatgat 73
Query: 587 tttcaaagaccatagagatttcaatggaatctgtttctgaccggtgacatgtaaagtaac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 tttcaaagaccatagagatttcaatggaatctgtttctgaccggtgacatgtaaagtaac 133
Query: 647 agtgtaaatsttgctttccacccatttgacattttcaagttcaatattataaggcattgt 706
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 agtgtaaatgttgctttccacccatttgacattttcaagttcaatattataaggcattgt 193
Query: 707 tctggtattctgggaacggaaggagaaatccaagcatggacaaccattgatgggttcaaa 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tctggtattctgggaacggaaggagaaatccaagcatggacaaccattgatgggttcaaa 253
Query: 767 agaaccggagccgtggtttcctttaacaaaatcacaattgttgttggaagcagcggctgg 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agaaccggagccgtggtttcctttaacaaaatcacaattgttgttggaagcagcggctgg 313
Query: 827 tccgacagccaatactaaccaacatattagacctactattgtaaagtgcatggtcttcgc 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tccgacagccaatactaaccaacatattagacctactattgtaaagtgcatggtcttcgc 373
Query: 887 ga 888
||
Sbjct: 374 ga 375
>3x_Contig377
Length = 1850
Score = 633 bits (319), Expect = 0.0
Identities = 338/343 (98%), Gaps = 1/343 (0%)
Strand = Plus / Plus
Query: 181 tactcgttgaactggtggaagtggaagagctcgaggctaaagtagaggtaggcttctcac 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 tacttgttgaactggtggaagtggaagagctcgaggctaaagtagaggtaggcttctcac 1544
Query: 241 atggatagctctgaggatatttggtttcaccactcaattgagctggccagaaataacttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 atggatagctctgaggatatttggtttcaccactcaattgagctggccagaaataacttc 1604
Query: 301 ccgcatctgtttgagatctcttgtagttatcatagttgttacagccagtgattaaatcga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 ccgcatctgtttgagatctcttgtagttatcatagttgttacagccagtgattaaatcga 1664
Query: 361 aggtggttgtaccataagaccaatcagaacaatcagcactaccttgacagtactcatatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1665 aggtggttgtaccataagaccaatcagaacaatcagcactaccttgacagtactcatatt 1724
Query: 421 gaatttgaaaggtaggcatccaaacaatcgatggatcattggaatcggcttgaccataaa 480
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 1725 gaatttgaaaggtaggcatccatacaatcgatggatcattggaatcggcttgaccaaaaa 1784
Query: 481 cacggaaggtggcagtccagtccgttgggttatcaattaagta 523
||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 1785 cacggaaggtggcagtccagtccgttggg-tatcaataaagta 1826
>3x_Contig1807
Length = 66587
Score = 228 bits (115), Expect = 1e-59
Identities = 221/257 (85%)
Strand = Plus / Plus
Query: 402 ccttgacagtactcatattgaatttgaaaggtaggcatccaaacaatcgatggatcattg 461
|||||||| || || ||||||| || || ||||||||||| ||||||||| ||||||||
Sbjct: 12718 ccttgacaatattcgtattgaacttcgaaagtaggcatccacacaatcgattgatcattg 12777
Query: 462 gaatcggcttgaccataaacacggaaggtggcagtccagtccgttgggttatcaattaag 521
||||| | |||||| ||||||||||| || |||||||||||||||||||| |||||||||
Sbjct: 12778 gaatcagtttgaccgtaaacacggaaagtagcagtccagtccgttgggttgtcaattaag 12837
Query: 522 taagttttttcattgtatccaaataattggaaagtcgaaccatctggtgaattgacgcca 581
|||| ||||||||||| ||| ||||||||| ||| |||||||| ||||||| || |||
Sbjct: 12838 aaagtgttttcattgtacccatataattggatagtagaaccatccggtgaatcgatacca 12897
Query: 582 atgattttcaaagaccatagagatttcaatggaatctgtttctgaccggtgacatgtaaa 641
||||| ||||| ||||||||||||||||||||||| |||| | ||| ||||||||||
Sbjct: 12898 atgatcttcaacgaccatagagatttcaatggaatttgttcttcaccagtgacatgtact 12957
Query: 642 gtaacagtgtaaatstt 658
|||||||| ||||| ||
Sbjct: 12958 gtaacagtataaatgtt 12974
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5623
Number of Sequences: 1807
Number of extensions: 5623
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 3
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)